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A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
portfolio
publications
Using synthetic peptides and recombinant collagen to understand DDR–collagen interactions
Published in Biochim. Biophys. Acta - Mol. Cell Res. 1866, 118458 (2019), 2019
Recommended citation: Chen, E. A. & Lin, Y.-S. (2019). "Using synthetic peptides and recombinant collagen to understand DDR–collagen interactions." Biochim. Biophys. Acta - Mol. Cell Res. 1866, 118458.
Protein–Ligand Docking in the Machine-Learning Era
Published in Molecules 27, 4568 (2022), 2022
Recommended citation: Yang, C., Chen, E. A. & Zhang, Y. (2022). "Protein–Ligand Docking in the Machine-Learning Era." Molecules 27, 4568.
Integrated Molecular Modeling and Machine Learning for Drug Design
Published in J. Chem. Theory Comput. 19, 7478–7495 (2023), 2023
Recommended citation: Xia, S.*, Chen, E. A.* & Zhang, Y. (2023). "Integrated Molecular Modeling and Machine Learning for Drug Design." J. Chem. Theory Comput. 19, 7478–7495.
A repurposed drug interferes with nucleic acid to inhibit the dual activities of coronavirus Nsp13
Published in ACS Chem. Biol. 19 (7), 1593-1603 (2024), 2024
Recommended citation: Soper, N.*, Yardumian, I.*, Chen, E. A.*, Yang, C., Ciervo, S., Oom, A., Desvignes, L., Zhang, Y., & Lupoli, T. (2024). "A repurposed drug interferes with nucleic acid to inhibit the dual activities of coronavirus Nsp13." ACS Chem. Biol. 19(7), 1593-1603.
Can Deep Learning Blind Docking Methods be used to Predict Allosteric Compounds?
Published in J. Chem. Inf. Model. 65 (7), 3737–3748 (2025), 2025
Recommended citation: Chen, E. A., & Zhang, Y. (2025). "Can Deep Learning Blind Docking Methods be used to Predict Allosteric Compounds?" J. Chem. Inf. Model. 65(7), 3737–3748.
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Fine-Tuning DiffDock-L for Allosteric Kinase Docking
Published in J. Chem. Inf. Model.: Submitted, 2025
Recommended citation: Chen, E. A., Greene, J. & Zhang, Y. (2025). "Fine-Tuning DiffDock-L for Allosteric Kinase Docking"
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talks
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.